Supporting datasets for SBGNview package


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Documentation for package ‘SBGNview.data’ version 1.22.0

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cancer.ds A demo microarray dataset from a cancer study
chebi_compound.name Mapping table between two types of IDs
chebi_kegg Mapping table between two types of IDs
chebi_metacyc.SBGN Mapping table between two types of IDs
chebi_pathway.id Mapping table between two types of IDs
chebi_pathwayCommons Mapping table between two types of IDs
compound.name_kegg Mapping table between two types of IDs
compound.name_pathway.id Mapping table between two types of IDs
compound.name_pathwayCommons Mapping table between two types of IDs
ENZYME_pathway.id Mapping table between two types of IDs
hsa_ENTREZID_pathwayCommons Mapping table between two types of IDs
hsa_KO_ENTREZID Mapping table between two types of IDs
hsa_pathwayCommons_ENSEMBL Mapping table between two types of IDs
IFNg RNA-Seq result from a mouse IFNG knockout experiment
kegg_pathwayCommons Mapping table between two types of IDs
KO_pathway.id Mapping table between two types of IDs
KO_pathwayCommons Mapping table between two types of IDs
mapping Mapping table between two types of IDs
mmu_KO_ENSEMBL Mapping table between two types of IDs
mmu_KO_ENTREZID Mapping table between two types of IDs
mmu_pathwayCommons_ENSEMBL Mapping table between two types of IDs
mmu_pathwayCommons_ENTREZID Mapping table between two types of IDs
pathway.completeness.cutoff.info Cutoffs of pathway completeness used for defining existance of pathway in a species
pathway.species.pct_Mapped Pathway completeness in a species
pathwayCommons_SYMBOL Mapping table between two types of IDs
sbgn.xmls XML code of a SBGN-ML file
SYMBOL_pathway.id Mapping table between two types of IDs